Jul 24, 2020 | Publications
Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, and Richard Durbin Abstract Motivation The variation graph toolkit (VG) represents genetic variation as a graph. Although each path in the graph is a potential haplotype, most paths are...
Jul 24, 2020 | Publications
Hongxu Ding, Andrew D Bailey, IV, Miten Jain, Hugh Olsen, Benedict Paten Abstract Motivation Nucleotides modification status can be decoded from the Oxford Nanopore Technologies (ONT) nanopore sequencing ionic current signals. Although various algorithms have...
Jul 24, 2020 | Publications
Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen Bosworth, Joel Armstrong, Kristof Tigyi, Nicholas Maurer, Sergey Koren, Fritz J. Sedlazeck, Tobias Marschall, Simon Mayes, Vania Costa, Justin M. Zook, Kelvin J. Liu, Duncan...
Jul 22, 2020 | Publications
Jordan M Eizenga, Adam M Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison Abstract Motivation Pangenomics is a growing field within computational genomics. Many pangenomic analyses use...
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